PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han005922
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 256aa    MW: 27920.9 Da    PI: 4.8559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-11909PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.61.7e-144999155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+ a a++ a+++++g
  Han005922 49 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFANPEMPACAHDVAALSIKG 99
               68*****998.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-74999IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-1850107IPR016177DNA-binding domain
SMARTSM003804.5E-3050113IPR001471AP2/ERF domain
PROSITE profilePS5103221.06150107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2850108IPR001471AP2/ERF domain
PRINTSPR003679.2E-125162IPR001471AP2/ERF domain
CDDcd000183.83E-2851109No hitNo description
PRINTSPR003679.2E-1289109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAESSTTALP DPFPKQPESL EPNPKRLKRV RDDPDHEDGS SNTNNSKHPV YRGVRMRAWG  60
KWVSEIREPK KKSRIWLGTF ANPEMPACAH DVAALSIKGK SAILNFPELK HLLPRPESCT  120
PRDIQAAATK AASMDHLNPT TAPSTPSTSS SSSYSAASTL TSSSSTTSLV MSDEVSTGAP  180
TTTAEELCEI VELPSLGTSY DSTESRDDFV FVDSVWDYYS SPPWPSDYDV GYFGGEPPAN  240
VVSSGGFFFD VLLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1551107360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016440909.12e-66PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD36e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A103XN551e-101A0A103XN55_CYNCS; AP2/ERF domain-containing protein
STRINGVIT_11s0016g03350.t012e-60(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-52ERF family protein